SNP Profiles of UF 613   View Data

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 Key

 1234567891011121314
_Input profile
CGATCCTTCTACAGCCATAGAAACCTGT
1._RUQ_1573
__CCTTCTACAGCCAT_AAACCTGT
2._RUQ_1573
__CC___AG____AC__
3._UF_613
CGATCCTTCTACAGCCATAGAAACCTGT
4._RUQ_1573
CGATCCTTCTACAGCCATAGAAACCTGT
5._UF_613
CGATCCTTCTACAGCCATAGAAACCTGT
6._GC-08-046-1-57
CGATCCTTCTACAGCCATAGAAACCTGT
7._GC-08-046-1-57
CGATCCTTCTACAGCCATAGAAACCTGT
8._GC-08-046-1-57
CGATCCTTCTACAGCCATAGAAACCTGT
9._GC-08-046-1-57
CGATCCTTCTACAGCCATAGAAACCTGT
10._GC-08-046-1-57
CGATCCTTCTACAGCCATAGAAACCTGT
11._GC-05-057-2-08
CGATCCTTCTACAGCCATAGAAACCTGT
12._GC-05-057-2-08
CGATCCTTCTACAGCCATAGAAACCTGT
13._GC-05-057-2-08
CGATCCTTCTACAGCCATAGAAACCTGT
14._GC-05-057-2-08
CGATCCTTCTACAGCCATAGAAACCTGT
15._GC-05-057-2-08
CGATCCTTCTACAGCCATAGAAACCTGT
16._UF_613
CGATCCTTCTACAGCCATAGAAACCTGT
17._UF_613
CGATCCTTCTACAGCCATAGAAACCTGT
18._UF_613
CGATCCTTCTACAGCCATAGAAACCTGT
19._UF_613
CGATCCTTCTACAGCCATAGAAACCTGT
20._UF_613
CGATCCTTCTACAGCCATAGAAACCTGT
21._UF_613
CGATCCTTCTACAGCCATAGAAACCTGT
22._UF_613
CGATCCTTCTACAGCCATAGAAACCTGT
23._UF_613
CGATCCTTCTACAGCCATAGAAACCTGT
24._UF_613
CGATCCTTCTACAGCCATAGAAACCTGT
25._UF_613
CGATCCTTCTACAGCCATAGAAACCTGT
26._GC-08-046-1-57
CGATCCTTCTACAGCCATAGAAACCTGT
27._GC-08-046-1-57
CGATCCTTCTACAGCCATAGAAACCTGT
28._UF_613
CGATCCTTCTACAGCCATAGAAACCTGT
29._GC-08-046-1-57
CGATCCTTCTACAGCCATAGAAACCTGT
30._RUQ_1573
__CC_CTACAG_AT_____
31._UF_613
CGATAAGTTTCCAG_AAGGAGACCTGT
 1516171819202122232425262728
_Input profile
CCACCTAATTGGCTTTGGATTTAGCTAG
1._RUQ_1573
CCACCT_TTGGCT____AGCT_
2._RUQ_1573
CCAC_AATTGG_____AG_AG
3._UF_613
CCACCTAATTGGCTTTGGATTTAGCTAG
4._RUQ_1573
CCACCTAATTGGCTTTGGATTTAGCTAG
5._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
6._GC-08-046-1-57
CCACCT_TTGGCTTTGGATTTAGCTAG
7._GC-08-046-1-57
CCACCT_TTGGCTTTGGATTTAGCTAG
8._GC-08-046-1-57
CCACCT_TTGGCTTTGGATTTAGCTAG
9._GC-08-046-1-57
CCACCT_TTGGCTTTGGATTTAGCTAG
10._GC-08-046-1-57
CCACCT_TTGGCTTTGGATTTAGCTAG
11._GC-05-057-2-08
CCACCT_TTGGCTTTGGATTTAGCTAG
12._GC-05-057-2-08
CCACCT_TTGGCTTTGGATTTAGCTAG
13._GC-05-057-2-08
CCACCT_TTGGCTTTGGATTTAGCTAG
14._GC-05-057-2-08
CCACCT_TTGGCTTTGGATTTAGCTAG
15._GC-05-057-2-08
CCACCT_TTGGCTTTGGATTTAGCTAG
16._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
17._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
18._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
19._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
20._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
21._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
22._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
23._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
24._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
25._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
26._GC-08-046-1-57
CCACCT_TTGGCTTTGGATTTAGCTAG
27._GC-08-046-1-57
CCACCT_TTGGCTTTGGATTTAGCTAG
28._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
29._GC-08-046-1-57
CCACCT_TTGGCTTTGGATTTAGCTAG
30._RUQ_1573
CCAC___CCCT___TT_CT_
31._UF_613
CGACTTAGGGCGCTCTCGATCTAGTTAG
 29303132333435363738    
_Input profile
ATCTGTCCACCTCTGGAGTTX_XX_XX_XX_X
1._RUQ_1573
__GT___CTGGAG_X_XX_XX_XX_X
2._RUQ_1573
__GT____GG__X_XX_XX_XX_X
3._UF_613
ATCTGTCCACCTCTGGAGCTX_XX_XX_XX_X
4._RUQ_1573
ATCTGTCCACCTCTGGAGCTX_XX_XX_XX_X
5._UF_613
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
6._GC-08-046-1-57
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
7._GC-08-046-1-57
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
8._GC-08-046-1-57
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
9._GC-08-046-1-57
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
10._GC-08-046-1-57
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
11._GC-05-057-2-08
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
12._GC-05-057-2-08
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
13._GC-05-057-2-08
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
14._GC-05-057-2-08
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
15._GC-05-057-2-08
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
16._UF_613
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
17._UF_613
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
18._UF_613
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
19._UF_613
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
20._UF_613
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
21._UF_613
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
22._UF_613
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
23._UF_613
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
24._UF_613
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
25._UF_613
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
26._GC-08-046-1-57
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
27._GC-08-046-1-57
ATCTGTCCAACTCTGGAGCTX_XX_XX_XX_X
28._UF_613
ATCTGTCCAA_CTGGAGCTX_XX_XX_XX_X
29._GC-08-046-1-57
ATCTGTCCAA_CTGGAGCTX_XX_XX_XX_X
30._RUQ_1573
_______CC__X_XX_XX_XX_X
31._UF_613
AATTGTCCACCTCCCGAGCTX_XX_XX_XX_X

Input profile: UF_613

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A93 T2
 Dapeng Zhang, 2016

1._UF_613 RUQ_1573

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._UF_613 RUQ_1573

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._UF_613

98.7 %
38 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

4._UF_613 RUQ_1573

98.7 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._UF_613

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 10
 Dapeng Zhang, 2016

6._UF_613 GC-08-046-1-57

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._UF_613 GC-08-046-1-57

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._UF_613 GC-08-046-1-57

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

9._UF_613 GC-08-046-1-57

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

10._UF_613 GC-08-046-1-57

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._UF_613 GC-05-057-2-08

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

12._UF_613 GC-05-057-2-08

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

13._UF_613 GC-05-057-2-08

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._UF_613 GC-05-057-2-08

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._UF_613 GC-05-057-2-08

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._UF_613

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 4 > FP
 Dapeng Zhang, 2016

17._UF_613

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 3 > FP
 Dapeng Zhang, 2016

18._UF_613

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 1 > FP
 Dapeng Zhang, 2016

19._UF_613

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

20._UF_613

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 6
 Dapeng Zhang, 2016

21._UF_613

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 5 > FP
 Dapeng Zhang, 2016

22._UF_613

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 4 > FP
 Dapeng Zhang, 2016

23._UF_613

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 1 > FP
 Dapeng Zhang, 2016

24._UF_613

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 3
 Dapeng Zhang, 2016

25._UF_613

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

26._UF_613 GC-08-046-1-57

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

27._UF_613 GC-08-046-1-57

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

28._UF_613

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

29._UF_613 GC-08-046-1-57

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

30._UF_613 RUQ_1573

83.3 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

31._UF_613

68.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP929 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1165
31TcSNP1253 32TcSNP1270 33TcSNP1350 34TcSNP1414 35TcSNP1442
36TcSNP1458 37TcSNP1484 38TcSNP1520